Andrew W. Bergen, Ph.D. - Publications

Gene-Centric Analysis of Serum Cotinine Levels in African and European American Populations.
Hamidovic A, Goodloe RJ, Bergen AW, Benowitz NL, Styn MA, Kasberger JL, Choquet H, Young TR, Meng Y, Palmer C, Pletcher M, Kertesz S, Hitsman B, Spring B, Jorgenson E.
Neuropsychopharmacology. 2011 Nov 16. doi: 10.1038/npp.2011.280. [Epub ahead of print]
PubMed ID: 22089314

Gender-stratified gene and gene-treatment interactions in smoking cessation.
Lee W, Bergen AW, Swan GE, Li D, Liu J, Thomas P, Tyndale RF, Benowitz NL, Lerman C, Conti DV.
Pharmacogenomics J. 2011 Aug 2. doi: 10.1038/tpj.2011.30. [Epub ahead of print]
PubMed ID: 21808284

Association of Candidate Genes with Phenotypic Traits Relevant to Anorexia Nervosa.
Root TL, Szatkiewicz JP, Jonassaint CR, Thornton LM, Pinheiro AP, Strober M, Bloss C, Berrettini W, Schork NJ, Kaye WH, Bergen AW, Magistretti P, Brandt H, Crawford S, Crow S, Fichter MM, Goldman D, Halmi KA, Johnson C, Kaplan AS, KeelPK, Klump KL, La Via M, Mitchell JE, Rotondo A, Treasure J, Woodside DB, Bulik CM.
Eur Eat Disord Rev. 2011 Jul 21. doi: 10.1002/erv.1138. [Epub ahead ofprint]
PubMed ID: 21780254

Genetic Association of Recovery from Eating Disorders: The Role of GABA Receptor SNPs.
Bloss CS, Berrettini W, Bergen AW, Magistretti P, Duvvuri V, Strober M, Brandt H, Crawford S, Crow S, Fichter MM, Halmi KA, Johnson C, Kaplan AS, Keel P, Klump KL, Mitchell J, Treasure J, Woodside DB, Marzola E, Schork NJ, Kaye WH.
Neuropsychopharmacology 2011 Jul 13. doi: 10.1038/npp.2011.108. [Epub ahead ofprint]
PubMed ID: 21750581

A gene expression signature from peripheral whole blood for stage I lung adenocarcinoma.
Rotunno M, Hu N, Su H, Wang C, Goldstein AM, Bergen AW, Consonni D, Pesatori AC, Bertazzi PA, Wacholder S, Shih JH, Caporaso NE, Taylor PR, Landi MT.
Cancer Prev Res (Phila). 2011 Jul 8. [Epub ahead of print]
PubMed ID: 21742797

Varenicline for smoking cessation: nausea severity and variation in nicotinic receptor genes.
Swan GE, Javitz HS, Jack LM, Wessel J, Michel M, Hinds DA, Stokowksi RP, McClure JB, Catz SL, Richards J, Zbikowski SM, Deprey M, McAfee T, Conti DV, Bergen AW.
Pharmacogenomics J. 2011 May 24. [Epub ahead of print]
PubMed ID: 21606948

Absence of association between specific common variants of the obesity-related FTO gene and psychological and behavioral eating disorder phenotypes.
Jonassaint CR, Szatkiewicz JP, Bulik CM, Thornton LM, Bloss C, Berrettini WH, Kaye WH, Bergen AW, Magistretti P, Strober M, Keel PK, Brandt H, Crawford S, CrowS, Fichter MM, Goldman D, Halmi KA, Johnson C, Kaplan AS, Klump KL, La Via M, Mitchell JE, Rotondo A, Treasure J, Woodside DB.
Am J Med Genet B Neuropsychiatr Genet. 2011 Mar 22. doi: 10.1002/ajmg.b.31182. [Epub ahead of print]
PubMed ID: 21438147

Genetic Variability of Smoking Persistence in African Americans.
Hamidovic A, Kasberger J, Young TR, Goodloe RJ, Redline S, Buxbaum SG, Benowitz NL, Bergen AW, Butler KR Jr, Franceschini N, Gharib SA, Hiitsman B, Levy D, Meng Y, Papanicolaou GJ, Preiss SR, Spring BJ, Styn MA, Tong EK, White W, Wiggins KL, Jorgenson E.
Cancer Prev Res (Phila). 2011 Mar 24. [Epub ahead of print]
PubMed ID: 21436384

Association of the Calcyon Neuron-Specific Vesicular Protein Gene (CALY) With Adolescent Smoking Initiation in China and California.
Li D, London SJ, Liu J, Lee W, Jiang X, Van Den Berg D, Bergen AW, Nishita D, Waleh N, Swan GE, Gallaher P, Chou CP, Shih JC, Unger JB, Gauderman WJ, Gilliland F, Johnson CA, Conti DV.
Am J Epidemiol. 2011 Mar 16. [Epub ahead of print]
PubMed ID: 21415033

Association of the Nicotine Metabolite Ratio and CHRNA5/CHRNA3 Polymorphisms With Smoking Rate Among Treatment-Seeking Smokers.
Falcone M, Jepson C, Benowitz N, Bergen AW, Pinto A, Wileyto EP, Baldwin D, Tyndale RF, Lerman C, Ray R.
Nicotine Tob Res. 2011 Mar 8. [Epub ahead of print]
PubMed ID: 21385908

Inherited polymorphisms in the RNA-mediated interference machinery affect microRNA expression and lung cancer survival.
Rotunno M, Zhao Y, Bergen AW, Koshiol J, Burdette L, Rubagotti M, Linnoila RI, Marincola FM, Bertazzi PA, Pesatori AC, Caporaso NE, McShane LM, Wang E, Landi MT.
Br J Cancer. 2010 Nov 23. [Epub ahead of print]
PubMed ID: 21102586

A genome-wide association study on common SNPs and rare CNVs in anorexia nervosa.
Wang K, Zhang H, Bloss CS, Duvvuri V, Kaye W, Schork NJ, Berrettini W, Hakonarson H; Price Foundation Collaborative Group.
Mol Psychiatry. 2011 Sep;16(9):949-59. doi: 10.1038/mp.2010.107. Epub 2010 Nov 16.
PubMed ID: 21079607

Resequencing of nicotinic acetylcholine receptor genes and association of common and rare variants with the Fagerström test for nicotine dependence.
Wessel J, McDonald SM, Hinds DA, Stokowski RP, Javitz HS, Kennemer M, Krasnow R, Dirks W, Hardin J, Pitts SJ, Michel M, Jack L, Ballinger DG, McClure JB, Swan GE, Bergen AW.
Neuropsychopharmacology. 2010 Nov;35(12):2392-402. Epub 2010 Aug 25.
PubMed ID: 20736995

Using DNA fingerprints to infer familial relationships within NHANES III households.
Katki HA, Sanders CL, Graubard BI, Bergen AW.
J Am Stat Assoc. 2010 Jun 1;105(490):552-563.
PubMed ID: 20664713

Association study of 182 candidate genes in anorexia nervosa.
Pinheiro AP, Bulik CM, Thornton LM, Sullivan PF, Root TL, Bloss CS, Berrettini WH, Schork NJ, Kaye WH, Bergen AW, Magistretti P, Brandt H, Crawford S, Crow S, Fichter MM, Goldman D, Halmi KA, Johnson C, Kaplan AS, Keel PK, Klump KL, La Via M, Mitchell JE, Strober M, Rotondo A, Treasure J, Woodside DB. Am J Med Genet B Neuropsychiatr Genet. 2010 Jul;153B(5):1070-80.
PubMed ID: 20468064

MicroRNA expression differentiates histology and predicts survival of lung cancer.
Landi MT, Zhao Y, Rotunno M, Koshiol J, Liu H, Bergen AW, Rubagotti M, Goldstein AM, Linnoila I, Marincola FM, Tucker MA, Bertazzi PA, Pesatori AC, Caporaso NE, McShane LM, Wang E.
Clin Cancer Res. 2010 Jan 15;16(2):430-41. Epub 2010 Jan 12.
PubMed ID: 20068076

Nicotine withdrawal sensitivity, linkage to chr6q26, and association of OPRM1 SNPs in the SMOking in FAMilies (SMOFAM) sample.
Hardin J, He Y, Javitz HS, Wessel J, Krasnow RE, Tildesley E, Hops H, Swan GE, Bergen AW.
Cancer Epidemiol Biomarkers Prev. 2009 Dec;18(12):3399-406.
PubMed ID: 19959688

Alcohol consumption and lung cancer risk in the Environment and Genetics in Lung Cancer Etiology (EAGLE) study.
Bagnardi V, Randi G, Lubin J, Consonni D, Lam TK, Subar AF, Goldstein AM, Wacholder S, Bergen AW, Tucker MA, Decarli A, Caporaso NE, Bertazzi PA, Landi MT.
Am J Epidemiol. 2010 Jan 1;171(1):36-44. Epub 2009 Nov 22.
PubMed ID: 19933698

Clinical trial participant characteristics and saliva and DNA metrics.
Nishita DM, Jack LM, McElroy M, McClure JB, Richards J, Swan GE, Bergen AW.
BMC Med Res Methodol. 2009 Oct 29;9:71.
PubMed ID: 19874586

A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.
Landi MT, Chatterjee N, Yu K, Goldin LR, Goldstein AM, Rotunno M, Mirabello L, Jacobs K, Wheeler W, Yeager M, Bergen AW, Li Q, Consonni D, Pesatori AC, Wacholder S, Thun M, Diver R, Oken M, Virtamo J, Albanes D, Wang Z, Burdette L, Doheny KF, Pugh EW, Laurie C, Brennan P, Hung R, Gaborieau V, McKay JD, Lathrop M, McLaughlin J, Wang Y, Tsao MS, Spitz MR, Wang Y, Krokan H, Vatten L, Skorpen F, Arnesen E, Benhamou S, Bouchard C, Metsapalu A, Vooder T, Nelis M, Välk K, Field JK, Chen C, Goodman G, Sulem P, Thorleifsson G, Rafnar T, Eisen T, Sauter W, Rosenberger A, Bickeböller H, Risch A, Chang-Claude J, Wichmann HE, Stefansson K, Houlston R, Amos CI, Fraumeni JF Jr, Savage SA, Bertazzi PA, Tucker MA, Chanock S, Caporaso NE.
Am J Hum Genet. 2009 Nov;85(5):679-91. Epub 2009 Oct 15.
PubMed ID: 19836008

A systems biology network model for genetic association studies of nicotine addiction and treatment.
Thomas PD, Mi H, Swan GE, Lerman C, Benowitz N, Tyndale RF, Bergen AW, Conti DV; Pharmacogenetics of Nicotine Addiction and Treatment Consortium.
Pharmacogenet Genomics. 2009 Jul;19(7):538-51.
PubMed ID: 19525886

Dopamine genes and nicotine dependence in treatment-seeking and community smokers.
Bergen AW, Conti DV, Van Den Berg D, Lee W, Liu J, Li D, Guo N, Mi H, Thomas PD, Lessov-Schlaggar CN, Krasnow R, He Y, Nishita D, Jiang R, McClure JB, Tildesley E, Hops H, Tyndale RF, Benowitz NL, Lerman C, Swan GE.
Neuropsychopharmacology. 2009 Sep;34(10):2252-64. Epub 2009 Jun 3.
PubMed ID: 19494806

Phase I metabolic genes and risk of lung cancer: multiple polymorphisms and mRNA expression.
Rotunno M, Yu K, Lubin JH, Consonni D, Pesatori AC, Goldstein AM, Goldin LR, Wacholder S, Welch R, Burdette L, Chanock SJ, Bertazzi PA, Tucker MA, Caporaso NE, Chatterjee N, Bergen AW, Landi MT.
PLoS One. 2009 May 21;4(5):e5652.
PubMed ID: 19479063

Impact of x chromosome genes in explaining the excess risk of cancer in males.
Biggar RJ, Bergen AW, Poulsen GN.
Am J Epidemiol. 2009 Jul 1;170(1):65-71. Epub 2009 May 11.
PubMed ID: 19433615

A partially linear tree-based regression model for multivariate outcomes.
Yu K, Wheeler W, Li Q, Bergen AW, Caporaso N, Chatterjee N, Chen J.
Biometrics. 2010 Mar;66(1):89-96. Epub 2009 May 7.
PubMed ID: 19432770

Pathway analysis by adaptive combination of P-values.
Yu K, Li Q, Bergen AW, Pfeiffer RM, Rosenberg PS, Caporaso N, Kraft P, Chatterjee N.
Genet Epidemiol. 2009 Dec;33(8):700-9.
PubMed ID: 19333968

Genetic and environmental influences on the ratio of 3'hydroxycotinine to cotinine in plasma and urine.
Swan GE, Lessov-Schlaggar CN, Bergen AW, He Y, Tyndale RF, Benowitz NL.
Pharmacogenet Genomics. 2009 May;19(5):388-98.
PubMed ID: 19300303

Genome-wide and candidate gene association study of cigarette smoking behaviors.
Caporaso N, Gu F, Chatterjee N, Sheng-Chih J, Yu K, Yeager M, Chen C, Jacobs K, Wheeler W, Landi MT, Ziegler RG, Hunter DJ, Chanock S, Hankinson S, Kraft P, Bergen AW.
PLoS One. 2009;4(2):e4653. Epub 2009 Feb 27.
PubMed ID: 19247474

SLC6A3 and body mass index in the Prostate, Lung, Colorectal and Ovarian Cancer Screening Trial.
Azzato EM, Morton LM, Bergen AW, Wang SS, Chatterjee N, Kvale P, Yeager M, Hayes RB, Chanock SJ, Caporaso NE.
BMC Med Genet. 2009 Jan 30;10:9.
PubMed ID: 19183461

Dopamine D2 receptor polymorphisms and adenoma recurrence in the Polyp Prevention Trial.
Murphy G, Cross AJ, Sansbury LS, Bergen A, Laiyemo AO, Albert PS, Wang Z, Yu B, Lehman T, Kalidindi A, Modali R, Schatzkin A, Lanza E.
Int J Cancer. 2009 May 1;124(9):2148-51.
PubMed ID: 19065655

Genome-wide linkage of cotinine pharmacokinetics suggests candidate regions on chromosomes 9 and 11.
He Y, Bergen AW, Hops H, Andrews JA, Tildesley E, Lessov-Schlaggar CN, Webster C, Benowitz N, Swan GE.
Am J Med Genet B Neuropsychiatr Genet. 2009 Jun 5;150B(4):554-9.
PubMed ID: 18785207

Correlation of population parameters leading to power differences in association studies with population stratification.
He Y, Jiang R, Fu W, Bergen AW, Swan GE, Jin L.
Ann Hum Genet. 2008 Nov;72(Pt 6):801-11. Epub 2008 Jul 24.
PubMed ID: 18652602

Dopamine and opioid gene variants are associated with increased smoking reward and reinforcement owing to negative mood.
Perkins KA, Lerman C, Grottenthaler A, Ciccocioppo MM, Milanak M, Conklin CA, Bergen AW, Benowitz NL.
Behav Pharmacol. 2008 Sep;19(5-6):641-9.
PubMed ID: 18690118

Gene and gene by sex associations with initial sensitivity to nicotine in nonsmokers.
Perkins KA, Lerman C, Coddington S, Jetton C, Karelitz JL, Wilson A, Jennings JR, Ferrell R, Bergen AW, Benowitz NL.
Behav Pharmacol. 2008 Sep;19(5-6):630-40.
PubMed ID: 18690117

Nicotinic acetylcholine receptor beta2 subunit gene implicated in a systems-based candidate gene study of smoking cessation.
Conti DV, Lee W, Li D, Liu J, Van Den Berg D, Thomas PD, Bergen AW, Swan GE, Tyndale RF, Benowitz NL, Lerman C; Pharmacogenetics of Nicotine Addiction and Treatment Consortium.
Hum Mol Genet. 2008 Sep 15;17(18):2834-48. Epub 2008 Jul 1.
PubMed ID: 18593715

Environment And Genetics in Lung cancer Etiology (EAGLE) study: an integrative population-based case-control study of lung cancer.
Landi MT, Consonni D, Rotunno M, Bergen AW, Goldstein AM, Lubin JH, Goldin L, Alavanja M, Morgan G, Subar AF, Linnoila I, Previdi F, Corno M, Rubagotti M, Marinelli B, Albetti B, Colombi A, Tucker M, Wacholder S, Pesatori AC, Caporaso NE, Bertazzi PA.
BMC Public Health. 2008 Jun 6;8:203.
PubMed ID: 18538025

Linkage analysis of anti-CCP levels as dichotomized and quantitative traits using GAW15 single-nucleotide polymorphism scan of NARAC families.
Yang XR, Kerstann KF, Bergen AW, Goldstein AM, Goldin LR.
BMC Proc. 2007;1 Suppl 1:S107. Epub 2007 Dec 18.
PubMed ID: 18466447

Polynucleotide kinase 3' phosphatase variant, dietary variables and risk of adenoma recurrence in the Polyp Prevention Trial.
Murphy G, Sansbury LS, Bergen AW, Wang Z, Schatzkin A, Lehman T, Kalidindi A, Modali R, Lanza E.
Eur J Cancer Prev. 2008 Jun;17(3):287-90.
PubMed ID: 18414202

Gene expression signature of cigarette smoking and its role in lung adenocarcinoma development and survival.
Landi MT, Dracheva T, Rotunno M, Figueroa JD, Liu H, Dasgupta A, Mann FE, Fukuoka J, Hames M, Bergen AW, Murphy SE, Yang P, Pesatori AC, Consonni D, Bertazzi PA, Wacholder S, Shih JH, Caporaso NE, Jen J.
PLoS One. 2008 Feb 20;3(2):e1651.
PubMed ID: 18297132

Genes implicated in serotonergic and dopaminergic functioning predict BMI categories.
Fuemmeler BF, Agurs-Collins TD, McClernon FJ, Kollins SH, Kail ME, Bergen AW, Ashley-Koch AE.
Obesity (Silver Spring). 2008 Feb;16(2):348-55.
PubMed ID: 18239643

Cis sequence effects on gene expression.
Bergen AW, Baccarelli A, McDaniel TK, Kuhn K, Pfeiffer R, Kakol J, Bender P, Jacobs K, Packer B, Chanock SJ, Yeager M.
BMC Genomics. 2007 Aug 29;8:296.
PubMed ID: 17727713

Predictors of sustained smoking cessation: a prospective analysis of chronic smokers from the alpha-tocopherol Beta-carotene cancer prevention study.
Augustson EM, Wanke KL, Rogers S, Bergen AW, Chatterjee N, Synder K, Albanes D, Taylor PR, Caporaso NE.
Am J Public Health. 2008 Mar;98(3):549-55. Epub 2007 Jun 28.
PubMed ID: 17600267

Genetic variation in catechol-O-methyltransferase (COMT) and obesity in the prostate, lung, colorectal, and ovarian (PLCO) cancer screening trial.
Wang SS, Morton LM, Bergen AW, Lan EZ, Chatterjee N, Kvale P, Hayes RB, Chanock SJ, Caporaso NE.
Hum Genet. 2007 Aug;122(1):41-9. Epub 2007 May 12.
PubMed ID: 17497175

DRD2 genetic variation in relation to smoking and obesity in the Prostate, Lung, Colorectal, and Ovarian Cancer Screening Trial.
Morton LM, Wang SS, Bergen AW, Chatterjee N, Kvale P, Welch R, Yeager M, Hayes RB, Chanock SJ, Caporaso NE.
Pharmacogenet Genomics. 2006 Dec;16(12):901-10.
PubMed ID: 17108814

Inflammatory cytokine gene polymorphisms, nonsteroidal anti-inflammatory drug use, and risk of adenoma polyp recurrence in the polyp prevention trial.
Sansbury LB, Bergen AW, Wanke KL, Yu B, Caporaso NE, Chatterjee N, Ratnasinghe L, Schatzkin A, Lehman TA, Kalidindi A, Modali R, Lanza E.
Cancer Epidemiol Biomarkers Prev. 2006 Mar;15(3):494-501.
PubMed ID: 16537707

Long-term storage and recovery of buccal cell DNA from treated cards.
Sigurdson AJ, Ha M, Cosentino M, Franklin T, Haque KA, Qi Y, Glaser C, Reid Y, Vaught JB, Bergen AW.
Cancer Epidemiol Biomarkers Prev. 2006 Feb;15(2):385-8.
PubMed ID: 16492933

Linkage analysis of the GAW14 simulated dataset with microsatellite and single-nucleotide polymorphism markers in large pedigrees.
Yang XR, Jacobs K, Kerstann KF, Bergen AW, Goldstein AM, Goldin LR.
BMC Genet. 2005 Dec 30;6 Suppl 1:S14.
PubMed ID: 16451599

Identification of susceptibility loci for complex diseases in a case-control association study using the Genetic Analysis Workshop 14 dataset.
Kerstann KF, Jacobs K, Yang XR, Bergen AW, Goldin LR, Goldstein AM.
BMC Genet. 2005 Dec 30;6 Suppl 1:S102.
PubMed ID: 16451558

Genetic variation and willingness to participate in epidemiologic research: data from three studies.
Bhatti P, Sigurdson AJ, Wang SS, Chen J, Rothman N, Hartge P, Bergen AW, Landi MT.
Cancer Epidemiol Biomarkers Prev. 2005 Oct;14(10):2449-53.
PubMed ID: 16214931

Effects of DNA mass on multiple displacement whole genome amplification and genotyping performance.
Bergen AW, Qi Y, Haque KA, Welch RA, Chanock SJ.
BMC Biotechnol. 2005 Sep 16;5:24.
PubMed ID: 16168060

Selection of eating-disorder phenotypes for linkage analysis.
Bulik CM, Bacanu SA, Klump KL, Fichter MM, Halmi KA, Keel P, Kaplan AS, Mitchell JE, Rotondo A, Strober M, Treasure J, Woodside DB, Sonpar VA, Xie W, Bergen AW, Berrettini WH, Kaye WH, Devlin B.
Am J Med Genet B Neuropsychiatr Genet. 2005 Nov 5;139B(1):81-7.
PubMed ID: 16152575

Linkage analysis of anorexia and bulimia nervosa cohorts using selected behavioral phenotypes as quantitative traits or covariates.
Bacanu SA, Bulik CM, Klump KL, Fichter MM, Halmi KA, Keel P, Kaplan AS, Mitchell JE, Rotondo A, Strober M, Treasure J, Woodside DB, Sonpar VA, Xie W, Bergen AW, Berrettini WH, Kaye WH, Devlin B.
Am J Med Genet B Neuropsychiatr Genet. 2005 Nov 5;139B(1):61-8.
PubMed ID: 16152574

Comparison of yield and genotyping performance of multiple displacement amplification and OmniPlex whole genome amplified DNA generated from multiple DNA sources.
Bergen AW, Haque KA, Qi Y, Beerman MB, Garcia-Closas M, Rothman N, Chanock SJ.
Hum Mutat. 2005 Sep;26(3):262-70.
PubMed ID: 16086324

Association of multiple DRD2 polymorphisms with anorexia nervosa.
Bergen AW, Yeager M, Welch RA, Haque K, Ganjei JK, van den Bree MB, Mazzanti C, Nardi I, Fichter MM, Halmi KA, Kaplan AS, Strober M, Treasure J, Woodside DB, Bulik CM, Bacanu SA, Devlin B, Berrettini WH, Goldman D, Kaye WH.
Neuropsychopharmacology. 2005 Sep;30(9):1703-10.
PubMed ID: 15920508

Effects of natural selection on interpopulation divergence at polymorphic sites in human protein-coding Loci.
Hughes AL, Packer B, Welch R, Bergen AW, Chanock SJ, Yeager M.
Genetics. 2005 Jul;170(3):1181-7. Epub 2005 May 23.
PubMed ID: 15911586

Effects of electron-beam irradiation on whole genome amplification.
Bergen AW, Qi Y, Haque KA, Welch RA, Garcia-Closas M, Chanock SJ, Vaught J, Castle PE.
Cancer Epidemiol Biomarkers Prev. 2005 Apr;14(4):1016-9.
PubMed ID: 15824182

Corroboration of a familial chordoma locus on chromosome 7q and evidence of genetic heterogeneity using single nucleotide polymorphisms (SNPs).
Yang XR, Beerman M, Bergen AW, Parry DM, Sheridan E, Liebsch NJ, Kelley MJ, Chanock S, Goldstein AM.
Int J Cancer. 2005 Sep 1;116(3):487-91.
PubMed ID: 15818627

CYP1A1 and CYP1B1 genotypes, haplotypes, and TCDD-induced gene expression in subjects from Seveso, Italy.
Landi MT, Bergen AW, Baccarelli A, Patterson DG Jr, Grassman J, Ter-Minassian M, Mocarelli P, Caporaso N, Masten SA, Pesatori AC, Pittman GS, Bell DA.
Toxicology. 2005 Feb 14;207(2):191-202.
PubMed ID: 15596250

Genetic analysis of bulimia nervosa: methods and sample description.
Kaye WH, Devlin B, Barbarich N, Bulik CM, Thornton L, Bacanu SA, Fichter MM, Halmi KA, Kaplan AS, Strober M, Woodside DB, Bergen AW, Crow S, Mitchell J, Rotondo A, Mauri M, Cassano G, Keel P, Plotnicov K, Pollice C, Klump KL, Lilenfeld LR, Ganjei JK, Quadflieg N, Berrettini WH.
Int J Eat Disord. 2004 May;35(4):556-70.
PubMed ID: 15101071

Genomic regions linked to alcohol consumption in the Framingham Heart Study.
Bergen AW, Yang XR, Bai Y, Beerman MB, Goldstein AM, Goldin LR; Framingham Heart Study.
BMC Genet. 2003 Dec 31;4 Suppl 1:S101.
PubMed ID: 14975169

A genome-wide linkage scan for body mass index on Framingham Heart Study families.
Moslehi R, Goldstein AM, Beerman M, Goldin L, Bergen AW; Framingham Heart Study.
BMC Genet. 2003 Dec 31;4 Suppl 1:S97.
PubMed ID: 14975165

SNP500 Cancer: a public resource for sequence validation and assay development for genetic variation in candidate genes.
Packer BR, Yeager M, Staats B, Welch R, Crenshaw A, Kiley M, Eckert A, Beerman M, Miller E, Bergen A, Rothman N, Strausberg R, Chanock SJ.
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D528-32.
PubMed ID: 14681474

Widespread purifying selection at polymorphic sites in human protein-coding loci.
Hughes AL, Packer B, Welch R, Bergen AW, Chanock SJ, Yeager M.
Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15754-7. Epub 2003 Dec 5.
PubMed ID: 14660790

Genetic analysis workshop 13: Summary of analyses of alcohol and cigarette use phenotypes in the Framingham Heart Study.
Saccone NL, Goode EL, Bergen AW.
Genet Epidemiol. 2003;25 Suppl 1:S90-7.
PubMed ID: 14635174

Performance of high-throughput DNA quantification methods.
Haque KA, Pfeiffer RM, Beerman MB, Struewing JP, Chanock SJ, Bergen AW.
BMC Biotechnol. 2003 Oct 28;3:20.
PubMed ID: 14583097

Significant linkage on chromosome 10p in families with bulimia nervosa.
Bulik CM, Devlin B, Bacanu SA, Thornton L, Klump KL, Fichter MM, Halmi KA, Kaplan AS, Strober M, Woodside DB, Bergen AW, Ganjei JK, Crow S, Mitchell J, Rotondo A, Mauri M, Cassano G, Keel P, Berrettini WH, Kaye WH.
Am J Hum Genet. 2003 Jan;72(1):200-7. Epub 2002 Dec 10.
PubMed ID: 12476400

Candidate gene analysis of the Price Foundation anorexia nervosa affected relative pair dataset.
Bergen AW, Yeager M, Welch R, Ganjei JK, Deep-Soboslay A, Haque K, van den Bree MB, Goldman D, Berrettini WH, Kaye WH; Price Foundation Collaborative Group (www.anbn.org).
Curr Drug Targets CNS Neurol Disord. 2003 Feb;2(1):41-51. Review.
PubMed ID: 12769811

Candidate gene studies in eating disorders.
Tozzi F, Bergen AW, Bulik CM.
Psychopharmacol Bull. 2002 Summer;36(3):60-90.
PubMed ID: 12473966

Identification of four variants in the tryptophan hydroxylase promoter and association to behavior.
Rotondo A, Schuebel K, Bergen A, Aragon R, Virkkunen M, Linnoila M, Goldman D, Nielsen D.
Mol Psychiatry. 1999 Jul;4(4):360-8.
PubMed ID: 10483053

Ancestral Asian source(s) of new world Y-chromosome founder haplotypes.
Karafet TM, Zegura SL, Posukh O, Osipova L, Bergen A, Long J, Goldman D, Klitz W, Harihara S, de Knijff P, Wiebe V, Griffiths RC, Templeton AR, Hammer MF.
Am J Hum Genet. 1999 Mar;64(3):817-31.
PubMed ID: 10053017

An Asian-Native American paternal lineage identified by RPS4Y resequencing and by microsatellite haplotyping.
Bergen AW, Wang CY, Tsai J, Jefferson K, Dey C, Smith KD, Park SC, Tsai SJ, Goldman D.
Ann Hum Genet. 1999 Jan;63(Pt 1):63-80.
PubMed ID: 10738521

Sib-pair linkage analyses of alcoholism: dichotomous and quantitative measures.
Korczak JF, Bergen AW, Goldstein AM, Weissbecker KA.
Genet Epidemiol. 1999;17 Suppl 1:S205-10.
PubMed ID: 10597437

A genome-wide search for loci contributing to smoking and alcoholism.
Bergen AW, Korczak JF, Weissbecker KA, Goldstein AM.
Genet Epidemiol. 1999;17 Suppl 1:S55-60.
PubMed ID: 10597412

Cigarette smoking.
Bergen AW, Caporaso N.
J Natl Cancer Inst. 1999 Aug 18;91(16):1365-75. Review.
PubMed ID: 10451441

Autosomal, mitochondrial, and Y chromosome DNA variation in Finland: evidence for a male-specific bottleneck.
Kittles RA, Bergen AW, Urbanek M, Virkkunen M, Linnoila M, Goldman D, Long JC.
Am J Phys Anthropol. 1999 Apr;108(4):381-99.
PubMed ID: 10229384

Cladistic association analysis of Y chromosome effects on alcohol dependence and related personality traits.
Kittles RA, Long JC, Bergen AW, Eggert M, Virkkunen M, Linnoila M, Goldman D.
Proc Natl Acad Sci U S A. 1999 Mar 30;96(7):4204-9.
PubMed ID: 10097188

Dual origins of Finns revealed by Y chromosome haplotype variation.
Kittles RA, Perola M, Peltonen L, Bergen AW, Aragon RA, Virkkunen M, Linnoila M, Goldman D, Long JC.
Am J Hum Genet. 1998 May;62(5):1171-9.
PubMed ID: 9545401

Mu opioid receptor gene variants: lack of association with alcohol dependence.
Bergen AW, Kokoszka J, Peterson R, Long JC, Virkkunen M, Linnoila M, Goldman D.
Mol Psychiatry. 1997 Oct-Nov;2(6):490-4.
PubMed ID: 9399694

General and specific inheritance of substance abuse and alcoholism.
Goldman D, Bergen A.
Arch Gen Psychiatry. 1998 Nov;55(11):964-5. No abstract available.
PubMed ID: 9819063

Mutation screening of the 5-hydroxytryptamine7 receptor gene among Finnish alcoholics and controls.
Pesonen U, Koulu M, Bergen A, Eggert M, Naukkarinen H, Virkkunen M, Linnoila M, Goldman D.
Psychiatry Res. 1998 Feb 27;77(3):139-45.
PubMed ID: 9707296

Identification of a Ser857-Asn857 substitution in DRK1 (KCNB1), population frequencies and lack of association to the low voltage alpha EEG trait.
Mazzanti CM, Bergen A, Enoch MA, Michelini S, Goldman D.
Hum Genet. 1996 Aug;98(2):134-7.
PubMed ID: 8698327

Mass allele detection (MAD) of rare 5-HT1A structural variants with allele-specific amplification and electrochemiluminescent detection.
Bergen A, Wang CY, Nakhai B, Goldman D.
Hum Mutat. 1996;7(2):135-43. Erratum in: Hum Mutat 1996;8(1):95.
PubMed ID: 8829630

Characterization of a gene coamplified with Ki-ras in Y1 murine adrenal carcinoma cells that codes for a putative membrane protein.
Scott AF, Elizaga A, Morrell J, Bergen A, Penno MB.
Genomics. 1994 Mar 15;20(2):227-30.
PubMed ID: 8020969

The polydeoxyadenylate tract of Alu repetitive elements is polymorphic in the human genome.
Economou EP, Bergen AW, Warren AC, Antonarakis SE.
Proc Natl Acad Sci U S A. 1990 Apr;87(8):2951-4.
PubMed ID: 2326257

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For more information about SRI International’s Molecular Genetics Research Program, call 650-859-4618 or email andrew.bergen@sri.com.