Artificial intelligence publications
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Integrated Pathway/Genome Databases and Their Role in Drug Discovery
We describe pathway-based analyses of the genomes of a number of medically relevant microorganisms, and a novel software tool that provides visualization of gene expression data on a diagram showing…
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EcoCyc: The Resource and the Lessons Learned
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Generating Qualitatively Different Plans through Metatheoretic Biases
With the objective of fostering increased user participation in the planning process, this paper presents an HTN-based framework for the abductive completion of plan sketches.
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Prolegomena to a Theory of Disability, Inability and Handicap
In this paper we extend a theory of action, IPT to try to elucidate these concepts. This attempt at elucidation is itself at most a prolegomena to a study that…
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What we do not know about sequence analysis and sequence databases
The marriage of high-throughput nucleotide sequencing with computational methods for the analysis of nucleotide and protein sequences have ushered in a new era of molecular biology.
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CPEF: A Continuous Planning and Execution Framework
This article reports on the first phase of the continuous planning and execution framework (CPEF), a system that employs sophisticated plan-generation, -execution, -monitoring, and -repair capabilities to solve complex tasks…
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Interpretation of Discourse and Proof Theory: Questions and Directions
A major theme of Johan’s Exploring Logical Dynamics is the move from using the tools of logic to analyze the products of cognitive processes to using those tools, including perhaps…
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Using the EcoCyc Database
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3–D Stereo Reconstruction of Human Faces driven by Differential Constraints
We propose a way to incorporate a priori information in a reconstruction process from a sequence of calibrated face images.
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A Collaborative Environment for Authoring Large Knowledge Bases
We present an architecture for scalable frame representation systems (FRSs). KBs must be supported for rapid construction by a collaborative effort of teams of knowledge engineers through reuse of existing…
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EcoCyc: Electronic Encyclopedia of E. coli Genes and Metabolism
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Information extraction using HMMs and shrinkage
This paper advocates for the use of HMMs for information extraction.