Artificial intelligence publications
-
Issues in Algorithm Characterization for Link Analysis
In this paper, we outline techniques for modeling algorithms that allow a system architecture to reason about their behavior and performance, individually and in combination.
-
The Outcomes of Pathway Database Computations Depend on Pathway Ontology
Different biological notions of pathways are used in different pathway databases. Those pathway ontologies significantly impact pathway computations.
-
Event Recognition in Airborne Motion Imagery
A system is described that detects high-level events of interest in airborne motion imagery.
-
Evidence supporting predicted metabolic pathways for Vibrio cholerae: gene expression data and clinical tests
Using the completed V.cholerae genome sequence and PathoLogic software, we created VchoCyc, a pathway-genome database that predicted 171 likely metabolic pathways in the bacterium.
-
The Pathway Tools Cellular Overview Diagram and Omics Viewer
Pathway Tools supports interrogation and exploration of cellular biochemical networks through the overview diagram and a software component called the Omics Viewer.
-
Advanced Patterns and Matches in Link Analysis
The Link Analysis Workbench (LAW) is a tool for detecting and monitoring situations of interest using inexact matching of graphical patterns.
-
Creating Fungal Pathway/Genome Databases Using Pathway Tools
The Pathway Tools software allows a group of scientists to create, update, and publish on the Web an evolving knowledge resource describing the genome and biochemical networks of the organism.
-
MetaCyc: a multiorganism database of metabolic pathways and enzymes
MetaCyc contains metabolic pathways, enzymatic reactions, enzymes, chemical compounds, genes and review-level comments.
-
Reducing Human Fatigue in Interactive Evolutionary Computation through Fuzzy Systems and Machine Learning Systems
We describe two approaches to reducing human fatigue in Interactive Evolutionary Computation (IEC). A predictor function is used to estimate the human user’s score, thus reducing the amount of effort…
-
Escherichia coli K-12: a cooperatively developed annotation snapshot 2005
The goal of this group project has been to coordinate and bring up-to-date information on all genes of Escherichia coli K-12. Annotation of the genome of an organism entails identification…
-
BioWarehouse: a bioinformatics database warehouse toolkit
We introduce BioWarehouse, an open source toolkit for constructing bioinformatics database warehouses using the MySQL and Oracle relational database managers.
-
A Cognitive Framework for Delegation to an Assistive User Agent
We present a BDI-based framework for a cognitive agent that acts as an assistant to a human user by performing tasks on her behalf. This framework accommodates: (1) user delegation…