Artificial intelligence publications
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An Evidence Ontology for use in Pathway/Genome Databases
This paper presents an ontology for encoding the type of support and the degree of support for DB assertions, and for encoding the literature source in which that support is…
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A Multimodal Learning Interface for Sketch, Speak and Point Creation of a Schedule Chart
We present a video demonstration of an agent-based test bed application for ongoing research into multi-user, multimodal, computer-assisted meetings.
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Trained Named Entity Recognition Using Distributional Clusters
This work applies boosted wrapper induction (BWI), a machine learning algorithm for information extraction from semi-structured documents, to the problem of named entity recognition.
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Using Functional and Organizational Information to Improve Genome-Wide Computational Prediction of Transcription Units on Pathway/Genome Databases
We implemented a TU predictor that uses only intergenic distance and functional classification of genes to predict TU boundaries, and applied it to EcoCyc, our PGDB of Escherichia coli.
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Interactive Execution Monitoring of Agent Teams
We describe a monitoring framework for integrating many domain-specific and task-specific monitoring techniques and then using the concept of value of an alert to avoid operator overload.
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A Mixed-initiative Framework for Robust Plan Sketching
We present a formal framework for robust plan sketching that defines key concepts and algorithms for interpreting and repairing plan sketches for two classes of problems.
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Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO)
In this paper, we assess the applicability of a Knowledge Base Management System (KBMS), Protégé-2000, to the maintenance and development of GO.
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Adjustable Autonomy Challenges in Personal Assistant Agents: A Position Paper
The successful integration and acceptance of many multi-agent systems into daily lives crucially depends on the ability to develop effective policies for adjustable autonomy.
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The Pathway Tools software and its Role in Anti-Microbial Drug Discovery
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PseudoCyc, a Pathway/Genome Database for Pseudomonas aeruginosa
Our PathoLogic software can generate a PGDB from an annotated genome of an organism, predicting the metabolic reactions and pathways corresponding to the enzymes present in the annotation.
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Introduction to a multiagent perspective
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The MetaCyc Metabolic Pathway Database