Artificial intelligence publications
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The MetaCyc Metabolic Pathway Database
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Using Transformations to Improve Semantic Matching
In this paper, we describe how transformations can augment existing semantic approaches to further improve matching.
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Execution Monitoring in Agent Teams
We characterize the domain-independent challenges posed by this problem, and describe how properties of domains influence the challenges and their solutions.
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HpyCyc: Helicobacter pylori Pathway/Genome Database
A Pathway/Genome Database for Helicobacter pylori is available at URL BioCyc.org. The database integrates the full genome of H. pylori with its computationally predicted metabolic pathways.
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Mixed-initiative Planning in PASSAT
We present the novel application of a general-purpose knowledge-based system, SHAKEN, to the specific task of acquiring knowledge for military Course of Action (COA) analysis.
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A Mixed-initiative Framework for Robust Plan Sketching
We present a formal framework for robust plan sketching that defines key concepts and algorithms for interpreting and repairing plan sketches for two classes of problems.
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Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO)
In this paper, we assess the applicability of a Knowledge Base Management System (KBMS), Protégé-2000, to the maintenance and development of GO.
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PASSAT: A User-centric Planning Framework
We describe a plan-authoring system called PASSAT (Plan Authoring System based on Sketches, Advice, and Templates) that combines interactive tools for constructing plans with a suite of automated and mixed-initiative…
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A persistent web application for distribution of weather information in Scheme
A new tool is being used to generate lexical parsers in Scheme. It is based on a cascade of lexers, described by tagged regular expressions (TREs) written as s-expressions. In…
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Deductive Response to Geographic Queries
They may reside on different machines in diverse locations. Knowledge may be represented according to different frameworks, notations, or coordinate systems. The answer may not exist anywhere explicitly; it may…
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Reflections on Godel’s and Gandy’s Reflections on Turing’s Thesis
We sketch the historical and conceptual context of Turing’s analysis of algorithmic or mechanical computation and then discuss two responses to that analysis.
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Evaluation of computational metabolic-pathway predictions for Helicobacter pylori
We seek to determine the accuracy of computational methods for predicting metabolic pathways in sequenced genomes, and to understand the contributions of both the prediction algorithms, and the reference pathway…