Artificial intelligence publications
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Computational analysis of Plasmodium falciparum metabolism: Organizing genomic information to facilitate drug discovery
We have constructed PlasmoCyc, a PGDB for Plasmodium falciparum 3D7, using its annotated genomic sequence. We also add 956 additional annotations to proteins annotated as “hypothetical” using the GeneQuiz annotation system.
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Toward a Theory of Qualitative Reasoning about Plans
We define a qualitative framework for reasoning about plan structure, defining a set of plan relations that characterize key interactions among plan components and a calculus for reasoning qualitatively about…
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Computational Prediction of Human Metabolic Pathways from the Complete Human Genome
We present a computational pathway analysis of the human genome that assigns enzymes encoded therein to predicted metabolic pathways.
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MetaCyc: a multiorganism database of metabolic pathways and enzymes
In the past 2 years the data content and the Pathway Tools software used to query, visualize and edit MetaCyc have been expanded significantly. These enhancements are described in this…
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Toward full automation of lexicon construction
We describe a technique of this nature called information theoretic co clustering and give results of a series of experiments built around it that demonstrate the main ingredients of lexical…
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Prioritizing Planning Decisions in Real-World Plan Authoring
This paper describes two methods for automatically prioritizing planning decisions. Both approaches have been implemented in PASSAT, a plan-authoring system in which users construct and modify plans interactively using a…
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Toward Unsupervised Whole-Corpus Tagging
We present a system for unsupervised tagging of words into classes produced by a distributional clustering technique called co-clustering.
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Interactive Execution Monitoring of Agent Teams
We describe a monitoring framework for integrating many domain-specific and task-specific monitoring techniques and then using the concept of value of an alert to avoid operator overload.
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HpyCyc: Helicobacter pylori Pathway/Genome Database
A Pathway/Genome Database for Helicobacter pylori is available at URL BioCyc.org. The database integrates the full genome of H. pylori with its computationally predicted metabolic pathways.
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Mixed-initiative Planning in PASSAT
We present the novel application of a general-purpose knowledge-based system, SHAKEN, to the specific task of acquiring knowledge for military Course of Action (COA) analysis.
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A Mixed-initiative Framework for Robust Plan Sketching
We present a formal framework for robust plan sketching that defines key concepts and algorithms for interpreting and repairing plan sketches for two classes of problems.
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Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO)
In this paper, we assess the applicability of a Knowledge Base Management System (KBMS), Protégé-2000, to the maintenance and development of GO.