Artificial intelligence publications
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Accurate Atom-Mapping Computation for Biochemical Reactions
We introduce a new method for computing atom mappings called the minimum weighted edit-distance (MWED) metric.
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The Use of Pattern Recognition Technology to Generate New Approaches to Prematurity Research
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Metabolomics Reveals Amino Acids Contribute to Variation in Response to Simvastatin Treatment
We used a gas chromatography-time-of-flight mass-spectrometry-based metabolomics platform to evaluate global effects of simvastatin on intermediary metabolism.
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Learning by Demonstration for a Collaborative Planning Environment
We describe the deployment of a learning by demonstration capability to support user creation of automated procedures in a collaborative planning environment that is used widely by the U.S. Army.
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Browsing Metabolic and Regulatory Networks with BioCyc
The BioCyc database collection at BioCyc.org integrates genome and cellular network information for more than 1,100 organisms.
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A Survey of Metabolic Databases Emphasizing the Metacyc Family
The main families are the MetaCyc, KEGG, Reactome, Model SEED, and BiGG families. We survey these database families, as well as important individual metabolic databases, including multiple human metabolic databases.
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Efficient Methods for Lifted Inference with Aggregate Factors
We propose an exact solution constant in n when k = 2 for certain aggregate operations such as AND, OR and SUM, and (b) a close approximation for inference with aggregate factors with time…
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Analysis and comparison of recent MLP features for LVCSR systems
This paper aims at providing a fair comparison of these recent progresses including the use of different long/short temporal inputs and the use of complex architectures that go beyond the…
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Discovering Novel Subsystems Using Comparative Genomics
We propose a novel method for the discovery of subsystems from annotated genomes.
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Cancer: a Computational Disease That AI Can Cure
We discuss these in the context of Cancer Commons, a “rapid learning” community where patients, physicians, and researchers collect and analyze the molecular and clinical data from every cancer patient,…
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Web-Based Metabolic Network Visualization with a Zooming User Interface
We present a Web-based metabolic-map diagram, which can be interactively explored by the user, called the Cellular Overview. The main characteristic of this application is the zooming user interface enabling…
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Biocyc: Microbial Genomes and Cellular Networks