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Home » Publication » Information & computer science publications

Information & computer science publications

Information & computer science publications July 1, 2021

The EcoCyc Database in 2021

Peter Karp, Suzanne Paley

This article highlights recent improvements to the curated data in the areas of metabolism, transport, DNA repair, and regulation of gene expression.

Information & computer science publications April 1, 2021

The BioCyc Metabolic Network Explorer

Peter Karp, Suzanne Paley

The Metabolic Network Explorer is a new addition to the BioCyc.org website and the Pathway Tools software suite that supports the interactive exploration of metabolic networks.

Information & computer science publications April 17, 2020

Speech‐based markers for post traumatic stress disorder in US veterans

Andreas Tsiartas, Colleen Richey, Jennifer Smith, Bruce Knoth, Dimitra Vergyri

This study demonstrates that a speech-based algorithm can objectively differentiate PTSD cases from controls.

Biomedical sciences publications August 16, 2019

Resources to discover and use short linear motifs in viral proteins

Paul O’Maille, Andrew Silberfarb

We survey viral uses of SLiMs to mimic host proteins, and information resources available for motif discovery.

Biomedical sciences publications May 2, 2019

Using pathway covering to explore connections among metabolites

Paul O’Maille, Mario Latendresse, Peter Karp

Pathway Covering is a new algorithm that takes a list of metabolites (compounds) and determines a minimum-cost set of metabolic pathways in an organism that includes (covers) all the metabolites in the list.

Biomedical sciences publications October 13, 2017

The Omics Dashboard for interactive exploration of gene-expression data

Peter Karp, Paul O’Maille, Suzanne Paley

The Omics Dashboard is a software tool for interactive exploration and analysis of gene-expression datasets.

Information & computer science publications October 1, 2017 Article

The Future of the Internet of Things

Peter Neumann

The IoT can become ubiquitous worldwide—if the pursuit of systemic trustworthiness can overcome the potential risks.

Information & computer science publications September 1, 2017

Building Code for the Internet of Things

Ulf Lindqvist

In this document, we focus on the challenges associated with composing systems, rather than building individual programs or devices.

Information & computer science publications March 1, 2017

FHE over the Integers: Decomposed and Batched in the Post-Quantum Regime

SRI International

We propose a comprehensive study of applying third generation FHE techniques to the regime of FHE-OI. We present and analyze a third generation FHE-OI based on decisional AGCD without the noise-free assumption.

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