Artificial intelligence publications
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Recommendations for End-User Development
We provide an overview of the state of the art in end-user development, focusing on the different kinds of recommendations made to users. We identify four classes of suggestion that…
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Machine Learning Methods for Metabolic Pathway Prediction
ML methods for pathway prediction perform as well as existing methods, and have qualitative advantages in terms of extensibility, tunability, and explainability.
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Creation of a Genome-Wide Metabolic Pathway Database for Populus trichocarpa Using a New Approach for Reconstruction and Curation of Metabolic Pathways for Plants
We developed a general approach for reconstructing metabolic pathway complements of plant genomes. Two new reference databases were created and added to the core of the infrastructure: PlantCyc, and RESD.
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Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
Pathway Tools is a production-quality software environment for creating a type of model-organism database called a Pathway/Genome Database (PGDB).
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Learning to Ask the Right Questions
Asking questions can clarify concepts, test hypotheses, add missing information, or provide additional knowledge to facilitate learning. The last item motivates the work described in this paper.
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A World Wider than the Web: End User Programming Across Multiple Domains
This chapter presents Integrated Task Learning (ITL), an approach for learning procedures across domains using end-user programming (EUP).
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Using Data Mining Findings to Aid Searching for Better Cognitive Models
We propose a hybrid approach in which we leverage findings from our previous educational data mining work to aid the search for a better cognitive model and thus, improve the…
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Bounded Verification of Adaptive Flight Control Systems
We formally verify a direct model reference adaptive control (MRAC) method that is used to enable flight control in adverse conditions.
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A Categorization of KR&R Methods for Requirement Analysis of a Query Answering Knowledge Base
Our long-term goal is to build a query answering system that can answer questions on a wide variety of topics and explain the answers.
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Pathway Tools Version 13.0: Integrated Software for Pathway/Genome Informatics and Systems Biology
Pathway Tools is a production-quality software environment for creating a type of model-organism database called a Pathway/Genome Database (PGDB).
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The Metacyc Database of Metabolic Pathways and Enzymes and the Biocyc Collection of Pathway/Genome Databases
Each BioCyc PGDB contains the predicted metabolic network of one organism, including metabolic pathways, enzymes, metabolites and reactions predicted by the Pathway Tools software using MetaCyc as a reference database.
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Deductive Formation of Recursive Workflows
We present an action theory with the power to represent recursive plans and the capability to reason about and synthesize recursive workflow control structures.