Publications
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MetaCyc: a multiorganism database of metabolic pathways and enzymes
MetaCyc contains metabolic pathways, enzymatic reactions, enzymes, chemical compounds, genes and review-level comments.
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The Pathway Tools Cellular Overview Diagram and Omics Viewer
Pathway Tools supports interrogation and exploration of cellular biochemical networks through the overview diagram and a software component called the Omics Viewer.
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Evidence supporting predicted metabolic pathways for Vibrio cholerae: gene expression data and clinical tests
Using the completed V.cholerae genome sequence and PathoLogic software, we created VchoCyc, a pathway-genome database that predicted 171 likely metabolic pathways in the bacterium.
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Advanced Patterns and Matches in Link Analysis
The Link Analysis Workbench (LAW) is a tool for detecting and monitoring situations of interest using inexact matching of graphical patterns.
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Washington State Achievers Scholarship Program Case Study: Final Report
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Creating Fungal Pathway/Genome Databases Using Pathway Tools
The Pathway Tools software allows a group of scientists to create, update, and publish on the Web an evolving knowledge resource describing the genome and biochemical networks of the organism.
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Detecting Action Items in Multi-party Meetings: Annotation and Initial Experiments
This paper presents the results of initial investigation and experiments into automatic action item detection from transcripts of multi-party human-human meetings.
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Semiconductor defect engineering – materials, synthetic structures and devices
This book explores the deliberate introduction and manipulation of defects and impurities for the purpose of engineering desired properties in semiconductor materials and devices.
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Working a call: multiparty management and interactional infrastructure in calls for help
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Optical gain from InAs nanocystal quantum dots in polymer matrix
We report on the observation of optical gain from InAs nanocrystal quantum dots which emit at 1.55microns and are imbedded in a novel polymer platform.
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AAAI: it’s time for large-scale systems
The most important challenge facing AI today is enabling components to interact in larger scale systems, where modules built with multiple alternative methodologies can be incorporated into robust applications.
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Segmentation of Aerial Surveillance Video Using a Mixture of Experts
We propose a video segmentation algorithm for aerial surveillance video. The algorithm uses a Mixture of Experts consisting of a supervised image segmentation algorithm named the Trainable Sequential MAP segmentation…