Publications
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Foundations And Opportunities For An Interdisciplinary Science Of Learning
In this chapter, we argue that the learning sciences are poised for a “decade of synergy.” We focus on several key traditions of theory and research with the potential for…
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Identifying Candidate Genes Using The BioWarehouse: A Case Study
The BioWarehouse is an open source data warehousing environment focused on supporting bioinformatics databases (DBs). BioWarehouse integrates public source DBs such as Swiss-Prot and GenBank into a unified normalized schema…
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The complete genome sequence of Francisella tularensis, the causative agent of tularemia
We report the complete genome sequence of a highly virulent isolate of F. tularensis. The sequence uncovers previously uncharacterized genes encoding type IV pili, a surface polysaccharide and iron-acquisition systems.
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Expansion of the BioCyc Collection of Pathway/Genome Databases to 160 Genomes
This paper discusses the computational methodology by which the BioCyc collection has been expanded, and presents an aggregate analysis of the collection that includes the range of number of pathways…
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Online Query Relaxation via Bayesian Causal Structures Discovery
We introduce a novel algorithm, TOQR, for relaxing failed queries over databases, that is, over-constrained DNF queries that return an empty result.
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Querying and Computing with BioCyc Databases
We describe multiple methods for accessing and querying the complex and integrated cellular data in the BioCyc family of databases.
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Morphology induction from term clusters
We address the problem of learning a morphological automaton directly from a monolingual text corpus without recourse to additional resources.
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Modeling Prosodic Feature Sequences for Speaker Recognition
We describe a novel approach to modeling idiosyncratic prosodic behavior for automatic speaker recognition.
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Angler: Collaboratively Expanding your Cognitive Horizon
The tool helps the group through the process of forming consensus, while preserving and quantifying differing ways of thinking. Angler provides a Web-based collaborative environment that allows users distributed by…
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Activity Recognition and Abnormality Detection with the Switching Hidden Semi-Markov model
We introduce the Switching Hidden Semi-Markov Model (S-HSMM), a two-layered extension of the hidden semi-Markov model (HSMM) for the modeling task.
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Scaling Up Technology-Based Educational Innovations
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Liquid-phase deposition of single-phase alpha-copper-indiumdiselenide,
Based on the first complete CuInSe phase diagram, which was recently established, we propose a new method for making single-phase copper-indium-diselenide (CuInSe2) films for high-specific-power photovoltaic applications: liquid-phase deposition.