Publications
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Designing Schools with and for Students: Lessons Learned from the Engage New England Initiative
This research brief identifies promising strategies for embracing student voice in school design based on the experience of Engage New England (ENE) grantees.
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The BioCyc Metabolic Network Explorer
The Metabolic Network Explorer is a new addition to the BioCyc.org website and the Pathway Tools software suite that supports the interactive exploration of metabolic networks.
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Confidence Calibration for Domain Generalization under Covariate Shift
We present novel calibration solutions via domain generalization. Our core idea is to leverage multiple calibration domains to reduce the effective distribution disparity between the target and calibration domains for…
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Neurofunctional characteristics of executive control in older people with HIV infection: a comparison with Parkinson’s disease
Expression of executive dysfunctions is marked by substantial heterogeneity in people living with HIV infection (PLWH) and attributed to neuropathological degradation of frontostriatal circuitry with age and disease.
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Portable Magnetometry for Detection of Biomagnetism in Ambient Environments
This paper presents a method of optical magnetometry that is able to detect biomagnetic signals generated from the human brain and heart in Earth’s ambient environment.
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Pathway Size Matters: The Influence of Pathway Granularity on Over-Representation (Enrichment) Statistics
We show that alternative pathway definitions can alter enrichment p -values by up to nine orders of magnitude, whereas statistical corrections typically alter enrichment p -values by only two orders…
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Leveraging Curation Among Escherichia coli Pathway/Genome Databases Using Ortholog-Based Annotation Propagation
We have developed a method to automatically propagate multiple types of curated knowledge from genes and proteins in one genome database to their orthologs in uncurated databases for related strains,…
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Prediction of Selected Biosynthetic Pathways for the Lipopolysaccharide Components in Porphyromonas gingivalis
We use bioinformatics tools to predict biosynthetic pathways for the production of the normal (O-type) lipopolysaccharide in the W50 strain Porphyromonas gingivalis and compare the pathway with other putative pathways…
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Physiological Responses to Acute Psychosocial Stress in Women with Menopausal Insomnia
Insomnia disorder is a common sleep disorder and frequently emerges in the context of menopause, being associated with menopause-specific factors such as hot flashes and other psychosocial variables.
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Sleep and Circadian Regulation of the Autonomic Nervous System
The ANS is under the influence of circadian and sleep-dependent modulation. Forced desynchrony and constant routine protocols indicate strong circadian influences on heart rate and cardiac vagal activity.
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Early Childhood Education During the COVID-19 Pandemic: The Experiences of Arkansas Educators
SRI International and the National Center on Children in Poverty collected information on how Arkansas early care providers are implementing state COVID-19-related guidelines and coping with the challenges related to…
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Building Teacher Capacity in K–12 Computer Science by Promoting Formative Assessment Literacy
The rapid expansion of computer science (CS) instruction in primary and secondary education has highlighted the shortage of teachers qualified to teach the subject.